PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01094g03010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 623aa MW: 71506.6 Da PI: 6.2152

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01094g03010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.2	3.8e-26	56	152	1	95
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f v+k+FG snv+k +++l++ +++a++s ++e++ +++dPv+G +g ++kl Niben101Scf01094g03010.1 56 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVQKVFGISNVTKKIESLDDVAeQDEAIKSFFWEGRLWQEDPVHGPFGEYKKL 140 7*********9866******************************766549************************* PP DUF260 84 qqqleqlkaela 95 +qql++l +e Niben101Scf01094g03010.1 141 EQQLKELMEEKR 152 ****998865 PP
2	DUF260	83.2	3.8e-26	306	402	1	95
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f v+k+FG snv+k +++l++ +++a++s ++e++ +++dPv+G +g ++kl Niben101Scf01094g03010.1 306 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVQKVFGISNVTKKIESLDDVAeQDEAIKSFFWEGRLWQEDPVHGPFGEYKKL 390 7*********9866******************************766549************************* PP DUF260 84 qqqleqlkaela 95 +qql++l +e Niben101Scf01094g03010.1 391 EQQLKELMEEKR 402 ****998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.314	55	158	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-26	56	151	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	17.314	305	408	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-26	306	401	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MCFFPDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV GSNRPACASC 60 KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE QDEAIKSFFW 120 EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM VARRQISTIS 180 TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE VQFQQYPSRT 240 LQAEGRGISH LANYNDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV 300 GSNRPACASC KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE 360 QDEAIKSFFW EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM 420 VARRQISTIS TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE 480 VQFQQYPSRT LQAEGRGISH LANYNGHCQL HQQRCSYINV DLGQGITRGR KRKGHTEHQL 540 VSPSCIGRHV RGREIGRISS FASFSDQWTD NAKTMLRDTT GGRHCEVTIP LPLQYKIFQQ 600 MEVTEELKLF NIISLTITTT IYQ

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MCFFPDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV GSNRPACASC  60
KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE QDEAIKSFFW  120
EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM VARRQISTIS  180
TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE VQFQQYPSRT  240
LQAEGRGISH LANYNDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV  300
GSNRPACASC KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE  360
QDEAIKSFFW EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM  420
VARRQISTIS TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE  480
VQFQQYPSRT LQAEGRGISH LANYNGHCQL HQQRCSYINV DLGQGITRGR KRKGHTEHQL  540
VSPSCIGRHV RGREIGRISS FASFSDQWTD NAKTMLRDTT GGRHCEVTIP LPLQYKIFQQ  600
MEVTEELKLF NIISLTITTT IYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-13	51	400	7	103	LOB family transfactor Ramosa2.1
5ly0_B	6e-13	51	400	7	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1J6ITB1	1e-172	A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRING	XP_009619683.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-18	LOB domain-containing protein 2