PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01111g06008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 99aa MW: 10992.4 Da PI: 4.724

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01111g06008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	87.4	1.4e-27	3	72	31	100
NF-YC 31 kadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 k+ +dvkmis eaP+++skacelfi elt r+w+ + + krrt++k d+a+av tdifdflv+ v +++ Niben101Scf01111g06008.1 3 KSSDDVKMISGEAPIIFSKACELFIEELTKRAWIITMQGKRRTIHKEDVASAVIATDIFDFLVNLVTESD 72 7899************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.0E-16	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.8E-20	3	69	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.9E-25	3	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MKKSSDDVKM ISGEAPIIFS KACELFIEEL TKRAWIITMQ GKRRTIHKED VASAVIATDI 60 FDFLVNLVTE SDVADNKCEV NEFSSHNGGI SEGRGEARD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-23	3	68	28	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628926.1	8e-52	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_016485723.1	8e-52	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_019237199.1	8e-52	PREDICTED: nuclear transcription factor Y subunit C-2-like
Swissprot	Q9ZVL3	4e-24	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A1J6JZQ0	2e-50	A0A1J6JZQ0_NICAT; Nuclear transcription factor y subunit c-9
TrEMBL	A0A1S4BA97	2e-50	A0A1S4BA97_TOBAC; nuclear transcription factor Y subunit C-2-like
STRING	XP_009628926.1	3e-51	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12881	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	1e-26	nuclear factor Y, subunit C3

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]