PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01124g04009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 198aa MW: 22024 Da PI: 8.9592

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01124g04009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.5e-41	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r d+++slvyeA++r+rdPvyG++g i++lqq Niben101Scf01124g04009.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVSENQRADTANSLVYEANVRLRDPVYGCMGAISALQQ 129 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q++ l+ el+++++e Niben101Scf01124g04009.1 130 QVQALQMELNVVRAE 144 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.199	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	45	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSRERERYEE IGKKIKREAD DYSQMGRRYL LGNPGTTTTL NTVTPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVSENQRAD TANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQALQMELNV VRAEILKYKF GDTATLTNIP SSHISSLLAS GAVSIVTAQP 180 PPPPPXXXXX XXXXXXXX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-46	38	162	4	125	LOB family transfactor Ramosa2.1
5ly0_B	8e-46	38	162	4	125	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227654.1	1e-120	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-80	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A314KQ00	1e-118	A0A314KQ00_NICAT; Lob domain-containing protein 15
STRING	XP_009591808.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-74	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]