PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01124g16011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 451aa MW: 51143.3 Da PI: 7.7283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01124g16011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.6	4.3e-28	66	152	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++Hn Niben101Scf01124g16011.1 66 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDAG---TSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKDHN 147 9*************************************999888...7788899************************* PP FAR1 87 Helap 91 Hel p Niben101Scf01124g16011.1 148 HELLP 152 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-25	66	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MVDHGVVVQS SLQVIGDMVD VVDNTCHNRD GVATSPKRSI AGVEGNADLE PRDGIEFESH 60 EAAYAFYQEY AKSMGFTTSI KNSRRSKKSK EFIDAKFACS RYGVTPESDA GTSRRPSVKK 120 TDCKASMHVK RKRDGKWYIH EFIKDHNHEL LPALAYHFRI HRNVKLAEKN NIDILHAVSE 180 RTRKIKCIFK SVTDEQFDLR WWKMVTRFEL QENEWIHKLY EERRKWVPAY MRGSFFAGMS 240 TVQRSESISS FFDKRAIELG EEGSLSEESY GIAFRVLDEA LKDCVNVNNR SSTLTECSSS 300 AIGLRDLEQD TQEIHATKTS RKKNTNKKRK VHTEPEAAIV EAQDSLQQMD NLSVGGMTLN 360 GYYGTQQNVQ GLIQLNLMEP PHDGYYVNHQ NMQGLGQLNT IAPGHDGFFG SQQSIPGLGH 420 LDFRQPSFTY GLQDEPSLRA SQLHGNSARH A

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MVDHGVVVQS SLQVIGDMVD VVDNTCHNRD GVATSPKRSI AGVEGNADLE PRDGIEFESH  60
EAAYAFYQEY AKSMGFTTSI KNSRRSKKSK EFIDAKFACS RYGVTPESDA GTSRRPSVKK  120
TDCKASMHVK RKRDGKWYIH EFIKDHNHEL LPALAYHFRI HRNVKLAEKN NIDILHAVSE  180
RTRKIKCIFK SVTDEQFDLR WWKMVTRFEL QENEWIHKLY EERRKWVPAY MRGSFFAGMS  240
TVQRSESISS FFDKRAIELG EEGSLSEESY GIAFRVLDEA LKDCVNVNNR SSTLTECSSS  300
AIGLRDLEQD TQEIHATKTS RKKNTNKKRK VHTEPEAAIV EAQDSLQQMD NLSVGGMTLN  360
GYYGTQQNVQ GLIQLNLMEP PHDGYYVNHQ NMQGLGQLNT IAPGHDGFFG SQQSIPGLGH  420
LDFRQPSFTY GLQDEPSLRA SQLHGNSARH A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635512.1	1e-145	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	4e-73	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0B0NR12	1e-171	A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein
STRING	XP_009767065.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	5e-66	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]