PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01124g18002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 365aa    MW: 42014.9 Da    PI: 6.9653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01124g18002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05204223120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C k+F+r  n++ H+
  Niben101Scf01124g18002.1 204 FSCPVCFKTFNRYINMQMHM 223
                               89*****************8 PP
2zf-C2H214.50.0001288310123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +Cgk F  + + ++H +++
  Niben101Scf01124g18002.1 288 FMCRKCGKAFAVRGDWRTHEKNC 310
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-5204223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.67204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-6270308No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808288308IPR007087Zinc finger, C2H2
SMARTSM0035549288308IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKSPPNF LHNFYSTNYQ SSYNHHPPPP  60
PSPPLKEALP LLSLSPIKHD HIDEVVVQEP VNCCTSTMDV DNKIKKSTDH NYYIKNDAAG  120
EQEEEENDVT VALHIGLPNP SAADLASILS SNRDEEEKEE ETYHDHDNDV TNMNTNMNMI  180
NTRLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYINMQ MHMWGHGSQY RKGPESLRGT  240
QPTGMLRLPC YCCTPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR  300
GDWRTHEKNC GKLWYCVCGS DFKHKRSLKD HIKAFGQGHG AYGIDNFEEE EDPASEVEQD  360
NESIL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792207.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY11e-137ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7XJH10.0A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like
STRINGXP_009792207.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]