PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01146g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 477aa MW: 53250.1 Da PI: 6.9911

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01146g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.7	4e-35	48	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+Ptd+el+ e+L++kv +k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk Niben101Scf01146g07001.1 48 LPAGVKFDPTDQELI-EHLEAKVLAKEsksH---HlidefipTIEGEdGICYAHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRK 127 799**********.99*99995551...333444333666646******.555666799************ PP NAM 75 nra...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+ + +W++tgk+++v+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Niben101Scf01146g07001.1 128 RRKiqtecqdlqaaGGETRWHKTGKTRPVML-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193 86777777765433778**********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-38	44	212	IPR003441	NAC domain
PROSITE profile	PS51005	33.154	48	212	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	49	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MSKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE 60 LIEHLEAKVL AKESKSHHLI DEFIPTIEGE DGICYAHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECQDLQA AGGETRWHKT GKTRPVMLNG KQKGCKKILV LYTNFGKNRK 180 PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SNTTTSTTAP GEASSDLNSR 240 RDSGSGSCSS SKDINNNIPS SHRDELSAAV CAAMSSYTTM DIQQFKPEHF IFLPFRKSFD 300 EAGIVVGEAS VEREGGSAAA AAASVGTSDG RDIHEPHHVS HEQQLHQHQH QHQHQHQHQH 360 HHQVATASFH ISRPSPPISA IITPPPLHNT SIILGHDDAF HVPRSIILPN ENLQQQQQQQ 420 QHHKLEGRSA SELEQLIMGC TSTDIKGDQS SITNPQDADW LKYSHFWPDP DNPDHHA

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MSKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE  60
LIEHLEAKVL AKESKSHHLI DEFIPTIEGE DGICYAHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECQDLQA AGGETRWHKT GKTRPVMLNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SNTTTSTTAP GEASSDLNSR  240
RDSGSGSCSS SKDINNNIPS SHRDELSAAV CAAMSSYTTM DIQQFKPEHF IFLPFRKSFD  300
EAGIVVGEAS VEREGGSAAA AAASVGTSDG RDIHEPHHVS HEQQLHQHQH QHQHQHQHQH  360
HHQVATASFH ISRPSPPISA IITPPPLHNT SIILGHDDAF HVPRSIILPN ENLQQQQQQQ  420
QHHKLEGRSA SELEQLIMGC TSTDIKGDQS SITNPQDADW LKYSHFWPDP DNPDHHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019245876.1	0.0	PREDICTED: uncharacterized protein LOC109225605 isoform X2
Swissprot	Q9M0F8	1e-178	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1J6J8M3	0.0	A0A1J6J8M3_NICAT; Nac domain-containing protein 73
STRING	XP_009790203.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-143	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]