PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01154g08005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 198aa MW: 22944.3 Da PI: 8.8414

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01154g08005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ + ++++++l +++ ++V++WFqN++a++++ Niben101Scf01154g08005.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSFQVQKITAHLslfgKIQCKNVFYWFQNHKARDRQ 63 89***************99***********************************996 PP
2	Wus_type_Homeobox	105.1	4.5e-34	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P++ ++q+ita+L+ +Gki+ kNVfyWFQN+kaR+rqk Niben101Scf01154g08005.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSFQVQKITAHLSLFGKIQCKNVFYWFQNHKARDRQK 64 579***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	1	64	IPR001356	Homeobox domain
SMART	SM00389	3.0E-7	1	68	IPR001356	Homeobox domain
CDD	cd00086	3.20E-6	2	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-7	3	63	IPR009057	Homeodomain-like
Pfam	PF00046	2.3E-16	3	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-11	3	64	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSF QVQKITAHLS LFGKIQCKNV FYWFQNHKAR 60 DRQKLRKQLL HQIEKNPTED NDNTQLPLLI NNTNSNDVVD LVDNYPFFLP NVHTLYPHSP 120 TILLHQTEGK ETSSAQIMNN VGKVDLRLTE NDMMRTNVQG WVLMMTDNMG QSSVPCCSNV 180 RPLETLQLFP VKETGVTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487673.1	1e-131	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1S4BFQ5	1e-130	A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like
STRING	XP_009626933.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	8e-33	WOX family protein