PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01159g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 212aa    MW: 24119 Da    PI: 9.8657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01159g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-18103153255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIr p     k +r +lg++ t+e+Aa a+++a+ k++g
  Niben101Scf01159g00002.1 103 RYRGVRRRP-WGKFAAEIRNP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 153
                               7********.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-23103162IPR016177DNA-binding domain
SMARTSM003801.8E-35103167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31103162IPR001471AP2/ERF domain
PROSITE profilePS5103224.302103161IPR001471AP2/ERF domain
CDDcd000187.07E-30103163No hitNo description
PfamPF008471.0E-13103153IPR001471AP2/ERF domain
PRINTSPR003672.6E-13104115IPR001471AP2/ERF domain
PRINTSPR003672.6E-13143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MYQQTTISDS DLSVLENIKF HLLNDTDFSQ IFSTFDQCFS NAKIINSPNS SFGSSPTEEI  60
SWGDMLTNMN SKSQRVDNLE HKEEAKESHV AARGVHAPQD WNRYRGVRRR PWGKFAAEIR  120
NPDRKGARLW LGTYETPEDA ALAYDQAAYK IRGSKARLNF PHLIGSNISE PVRVAPRRRC  180
LSPEISSSSF SLSFVENVPL KKRKLAENRI RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27104167669ATERF1
3gcc_A5e-27104167669ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512690.11e-136PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1S4DH471e-135A0A1S4DH47_TOBAC; ethylene-responsive transcription factor 13-like
STRINGXP_009798818.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-45ethylene-responsive element binding factor 13