PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01173g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 750aa    MW: 81840.2 Da    PI: 6.549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01173g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32336393260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Niben101Scf01173g00005.1 336 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 393
                               8****************************************.***************85 PP
2WRKY104.17.6e-33547605159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Niben101Scf01173g00005.1 547 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 605
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-29328394IPR003657WRKY domain
SuperFamilySSF1182909.15E-26334394IPR003657WRKY domain
SMARTSM007749.0E-37335393IPR003657WRKY domain
PROSITE profilePS5081123.399336394IPR003657WRKY domain
PfamPF031063.0E-25336392IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-37532607IPR003657WRKY domain
SuperFamilySSF1182901.57E-28539607IPR003657WRKY domain
PROSITE profilePS5081138.733542607IPR003657WRKY domain
SMARTSM007746.6E-38547606IPR003657WRKY domain
PfamPF031065.2E-25548605IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MVLRELIEDL TLDKKVWRSM IECRQLMGGF DDHVAIMGDW MPPSPSPRTF FSSLLGDDIG  60
SRSTFEFPNE NKRGNIASEP QEHVGNSDGA QADATTVKSD QKMSSRGGLL ERMAARAGFN  120
APKLNTESLR PADLSQNQSV RSPYLTIPPG LSPTSLLESP VFLSNSLVQP SPTTGKFQFA  180
SGIESRNSTF MMEDPDKSKD NALESINSSS FSFKPVPETA PSLFPGATSR VNSSNSSQQC  240
FPNLKVSVHS QNSLLSHCME ATQMQTQNEK GLHQSSDFPR FSAEKDGRDS NVTLDSTNFR  300
TVGKNVEHSP PLDEPQDEEI DQRVGGDSNV VGAPAEDGYN WRKYGQKQVK GSEYPRSYYK  360
CTHPNCPVKK KVERSHEGHI TEIIYKGAHN HPKPPPNRRS ALGSTNSLGE DGAEQGVSGS  420
NGDLGRANIQ KAPDAGGLDW RNNNLDVTSS AHLGSAYCNG SASFPVLNNT QLESGGAVDV  480
SSTFSNDEDE DDRGTHGSVS QGYDGEGDES ESKRRKLETY STDMSGATRA IREPRVVVQT  540
TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSAGCNV RKHVERASHD LKSVITTYEG  600
KHNHDVPAAR NSSHVNSGAS NTLPAPVTSP PVQSHLHRPE PAQLQNAMAR FDRQPSLGSF  660
GPTPGFSYGM NQQSLASLAM AGFHPNQSKS QQQVPVHSYL GQPRPMHDGG FMFPKEEPKA  720
EPMSDPGLDL SNGSSVYQQF MSRLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37336608878Probable WRKY transcription factor 4
2lex_A8e-37336608878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249923.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1S4CCF50.0A0A1S4CCF5_TOBAC; probable WRKY transcription factor 2 isoform X2
TrEMBLA0A1U7VPA70.0A0A1U7VPA7_NICSY; probable WRKY transcription factor 2 isoform X2
STRINGXP_009769736.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-178WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]