PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01177g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 696aa    MW: 80019.9 Da    PI: 6.788
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01177g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17859155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y+GVr+++  g+++AeI+dps   k kr++lg+++ta eAa a++ a+ kl+g
  Niben101Scf01177g04007.1  8 TCYRGVRQRP-GGKFAAEICDPSR--KGKRVWLGTYDTATEAAVAYDSAAIKLRG 59
                              68********.9*********843..34*************************98 PP
2RWP-RK55.89.3e-18514561552
                    RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                               i+ e l+++F +++ dAAk+L v+ ++LKr CR+y+I+RWPh k +++
  Niben101Scf01177g04007.1 514 ITREILEQHFGKTLVDAAKTLHVSRSTLKRVCREYNISRWPHHKTRKV 561
                               8999****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-12859IPR001471AP2/ERF domain
SMARTSM003801.4E-32973IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-21968IPR016177DNA-binding domain
PROSITE profilePS5103222.326967IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-281068IPR001471AP2/ERF domain
CDDcd000181.12E-271067No hitNo description
PRINTSPR003676.6E-111021IPR001471AP2/ERF domain
PRINTSPR003676.6E-114969IPR001471AP2/ERF domain
PfamPF124362.7E-1669142IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
PfamPF145339.4E-55152353IPR029346Ubiquitin carboxyl-terminal hydrolase, C-terminal
PROSITE profilePS5151913.048498584IPR003035RWP-RK domain
PfamPF020422.3E-18514561IPR003035RWP-RK domain
SuperFamilySSF542771.5E-17608694No hitNo description
SMARTSM006661.4E-14611693IPR000270PB1 domain
PROSITE profilePS5174519.453611693IPR000270PB1 domain
PfamPF005649.4E-15612692IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.8E-16613691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEFTLEKTCY RGVRQRPGGK FAAEICDPSR KGKRVWLGTY DTATEAAVAY DSAAIKLRGS  60
RAILNFPQKL VHFRALEKPK EDDFCLELAK SDTYDDVVVR VAQRLGVDDP SKIRLTLHNC  120
YSQQPKCNPI KYRSVDHLED MLIHGNQMSD ILYYKVLDIP LPELQCLKTL KVAFHHSKKD  180
EVEILNVRLP KQSTVGDFLN GIKSKVELSH PNAELRLLEI FYHKIYRIFP LTVKFENISD  240
QYWTLRAEEI PEEEKNLGPR DRLIHVYHFT KATPQNQMQV QNFGEPFFLV IHECETLAEI  300
KVRIQKKLQV PDEEFSKWQF AFLSLGHPEY LQDTDIVSSR FQQYLGLEHA DNTSKRPYVS  360
QEMEFRLSEI NGIFCSKDND SQRSENNVTT SLLVPSCSSH RPDLFNNERI EQVDFLLPHA  420
TEATVMNRGS MVNANVAHDR CNGGGEIVQP DLLCEKSNVE IDSSSNDKVE HNDIARGSSS  480
CERLFVEADA MTNIQNIDSK NKCTIARLEK DYGITREILE QHFGKTLVDA AKTLHVSRST  540
LKRVCREYNI SRWPHHKTRK VYHRVRQGVS LQSAEQYVED AQQHPDLSEE KGTDLLAHKK  600
LPAAEKPCDN LMTLKVTYRG DIIKFQLSPS ATRVELEVEV EKRFNISLQR CSIKYQDDDD  660
DWILITSNSD LRDGMNSLRL LGRTTMKLLV TPISET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-241070363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-241070666ATERF1
3gcc_A2e-241070666ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780863.10.0PREDICTED: uncharacterized protein LOC104229842
TrEMBLA0A1U7WQK30.0A0A1U7WQK3_NICSY; uncharacterized protein LOC104229842
STRINGXP_009780863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1571547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-26ethylene responsive element binding factor 5