PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01177g04029.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 729aa    MW: 84505.7 Da    PI: 6.6791
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01177g04029.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK55.21.3e-17566613552
                    RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                               i+ e l+++F +++ dAAk+L v+ ++LKr CR+y+I+RWPh k +++
  Niben101Scf01177g04029.1 566 ITREILEQHFGKTLVDAAKTLRVSRSTLKRVCREYNISRWPHHKTRKV 613
                               8999****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-1162110No hitNo description
Gene3DG3DSA:3.30.730.102.7E-56388IPR001471AP2/ERF domain
PROSITE profilePS510328.72963110IPR001471AP2/ERF domain
SMARTSM003808.1E-863116IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-563111IPR016177DNA-binding domain
PfamPF124363.7E-16112185IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
PfamPF145334.6E-56193401IPR029346Ubiquitin carboxyl-terminal hydrolase, C-terminal
PROSITE profilePS5151913.083550636IPR003035RWP-RK domain
PfamPF020423.8E-18566613IPR003035RWP-RK domain
SuperFamilySSF542773.92E-15659724No hitNo description
SMARTSM006662.3E-5663729IPR000270PB1 domain
PfamPF005643.3E-12663724IPR000270PB1 domain
PROSITE profilePS5174520.171663729IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.0E-14664724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MASLQQSTLD LITQLLLDDD AFLVSYGSSE TNTSFDSKTE LNRFKFEGKT EDSVQKMEDT  60
LKRYRGIRQR TGGKFVSEVS DPTRKGKRKQ PWHDRAALKL RGSRAILNFP QKLVHFRALE  120
KPKEDDFCLE LAKTDTYDDV VERVAQRLDV DDPSKIRLTP HNYYSQQPKP NPIKYRSMVH  180
LVDMLIHDNQ DILYYEVLEI PLPELQCLKT LKVAFHHSKK DEVEILNVRL PKQSTVEDFL  240
KGIKSKVELS HPNAELRLLE IFYHKIFKIL PLTEKFENIN DQYWTLRAEE IPEEEKNLGP  300
HDRLIHVYHF TKKTPQMPMQ NFGEPFFLVI HECETLVEIK VRVQKKLQVP DEEFSKWKLA  360
YVSFGHPEYL QDTDIVSSRF QRRYVYDAWD QYLGLEHADN TSKRPYVSQE MEFRLSEIND  420
IVYSKDNDSQ RSENNVTTLL VPSCSSHRPG LFNNERIEQV NLLLPDLLLP HATEATVMNR  480
GSMVNANVAH DRCNGGGEIV QSDLLCEKSN VEIDSSSNDK VDHNDIARVS SSCERLLVEA  540
DAMNNIQNID SKNKCTIARL EKDYGITREI LEQHFGKTLV DAAKTLRVSR STLKRVCREY  600
NISRWPHHKT RKVCHRVRQG VSLQSAEQYV EDAQQHPDLS QEKGTDLLAH KKSPAAEKPC  660
DNPMTLKVTY RGDIIKFQLS PSSTRVELEV EVEKRFNISL QRCSIKYQDD DDDWILITSN  720
SDLRAGVWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yoc_C1e-16122372250499Ubiquitin carboxyl-terminal hydrolase 7
5c56_A1e-16122372250499Ubiquitin carboxyl-terminal hydrolase 7
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780863.10.0PREDICTED: uncharacterized protein LOC104229842
TrEMBLA0A1U7WQK30.0A0A1U7WQK3_NICSY; uncharacterized protein LOC104229842
STRINGXP_009780863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1571547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-16Nin-like family protein