PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01182g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 402aa    MW: 44743.7 Da    PI: 8.3511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01182g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09194241455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf01182g03011.1 194 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 241
                               8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.90E-11188245No hitNo description
SuperFamilySSF474596.67E-17188257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6194241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAAFSYQLQH TNTFLLDSVF LPSSPIKMSG FLEEQNNSIV QNCFTQFYQP ESFQQLPTAN  60
VLVHESSYCL DQSTNVTVSQ NELNSVTNNS SSSVSLDMDS SSVTDKIESG NKPNFTPMDK  120
KRKSREGCSS MSSAHSKNVK QVDNGKKKKN NSQLVVKDEK KGKDDNKKEE KKANEEVPTG  180
YIHVRARRGQ ATDSHSLAER VRREKISERM KILQSLVPGC DKVTGKALML DEIINYVQSL  240
QNQVEFLSMK LASSNPMYYD FGMDLDALMV KPDQGLSGLG TPLPNMQQPS PTNITSQAAK  300
VIPNINNSGY PFLNNSASLM FQQVHFPNSI SQVILHNKFN IVIRVMDSSY GVQMTKDKNL  360
LISQDSATTF VLSINVTPKP CPTEHLHKFL EPCDGGGWVV KP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312696.10.0transcription factor bHLH137-like
RefseqXP_009786910.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A1U7XK930.0A0A1U7XK93_NICSY; transcription factor bHLH137
TrEMBLM5BCF40.0M5BCF4_TOBAC; BHLH transcription factor
STRINGXP_009786910.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-53bHLH family protein