PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01190g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 202aa MW: 22959.5 Da PI: 8.7383

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01190g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	175.4	2.8e-54	9	146	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 s +++CqdCGnqakkdC++ RCRtCC+srgf+C+thvkstW p++ rr r+++l+++ s+ ++++++ + +k Niben101Scf01190g00013.1 9 SSSSRCQDCGNQAKKDCTYLRCRTCCRSRGFHCQTHVKSTWAPVSTRRPRHHHLHQQLSTIQQQRQAGPNPSK------------ 81 56789*******************************************88877654433332222222222............ PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++++ + e ++P ev+ +avfrc+rvss+d+ +++aYqt+v+igGhvfkGiLydqG+e+ Niben101Scf01190g00013.1 82 --RYRENHEIQGEEEDDFPGEVRFSAVFRCIRVSSIDNVVDQYAYQTSVKIGGHVFKGILYDQGPEN 146 ..222233445667789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-57	11	145	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.8E-25	14	55	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-25	97	144	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MMMREVEGSS SSRCQDCGNQ AKKDCTYLRC RTCCRSRGFH CQTHVKSTWA PVSTRRPRHH 60 HLHQQLSTIQ QQRQAGPNPS KRYRENHEIQ GEEEDDFPGE VRFSAVFRCI RVSSIDNVVD 120 QYAYQTSVKI GGHVFKGILY DQGPENRYNN NMAAGESSSF QQQQPPNLLT PANTSTTAAP 180 SYPNPFSAFM PGTQFFQYPK SS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261916.1	1e-121	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9XGX0	5e-57	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1J6IQX1	1e-119	A0A1J6IQX1_NICAT; Protein shi related sequence 1
STRING	XP_009785993.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-53	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]