PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01192g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 329aa    MW: 36659.4 Da    PI: 10.1533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01192g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31257314359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Niben101Scf01192g02002.1 257 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 314
                               99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-7234253IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33243314IPR003657WRKY domain
PROSITE profilePS5081130.733250316IPR003657WRKY domain
SuperFamilySSF1182904.05E-27252314IPR003657WRKY domain
SMARTSM007741.2E-37255315IPR003657WRKY domain
PfamPF031062.9E-27257313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAVELMTSGY SRRDSFSTKM EENAVQEAAT DGLQSVEKLI RLLSQSHQNQ QQQQQKLDQN  60
PSVSADYTAV ADVAVNKFKK FISLLDKNRT GHARFRKGPI STPPPKPQQQ RLDQNSIKNH  120
NLQIEETEKP QKNSPKIYCP TPMQRLPPLP HNHLQLVKNG SIERKESSTT INFASASPAN  180
SFMSSLTGET ESLQHSLSSG FQITNISTVS SAGRPPLSTS FKRKCSSLDD TALKKSRVKR  240
VVRVPAISMK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDP  300
TMLIVTYEGE HNHSHSVTES PAAHVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21243313271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604893.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_016499499.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX02e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4CEW40.0A0A1S4CEW4_TOBAC; probable WRKY transcription factor 7
STRINGXP_009604893.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-85WRKY DNA-binding protein 7