PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01200g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 218aa    MW: 24577.1 Da    PI: 6.7259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01200g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-155096354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              r+h+e+E+rRRdriN  ++ Lr+l+P++     +K++Ka+ L+ +ve++k+L
  Niben101Scf01200g04003.1 50 RSHSEAEKRRRDRINAQLSSLRKLIPSS-----EKMDKAALLTSVVEHVKDL 96
                              78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8534796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-165099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-115097No hitNo description
PfamPF000101.2E-125096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1450106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1353102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.7E-6132195No hitNo description
CDDcd048733.91E-7132180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MMDNSSCCEY WPETEIQEVA AASPFLLPLV PNPCYWSQQF EEDTSASGSR SHSEAEKRRR  60
DRINAQLSSL RKLIPSSEKM DKAALLTSVV EHVKDLKGRA KEISQVANTP TDIDEVIIEH  120
LEEDENCIIL KVCLCCDDRP ELFSELNRAL SNLKLTTEEA NITSLGGRIK CVFVLKSVNG  180
VCFKSLKQSL SRIASSPCTS NYRIKSKRQR FFLPPNFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KSKRQR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787651.11e-137PREDICTED: transcription factor bHLH51
SwissprotQ9XEF01e-43BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A1U7XDC11e-136A0A1U7XDC1_NICSY; transcription factor bHLH51
STRINGXP_009787651.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]