PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01209g05011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 216aa    MW: 24303.1 Da    PI: 4.2018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01209g05011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-1453140197
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ffkv ++++++k++   +p +f+ e+g +   +  ++le ++g  W+vkl   ++sg+ ++++GW++F +   +  g f++F+++
  Niben101Scf01209g05011.1  53 FFKVILSPHASKLH---IPDEFMMEYGDN--LQDLVSLEVPNGAIWKVKL--HNCSGTAWFKEGWNKFKEYYSIGCGYFLLFRYN 130
                               88888888888876...*********977..6669***************..********************************* PP

                               SSSEE..EEEEE CS
                        B3  86 grsefelvvkvf 97 
                               g+s+f   v +f
  Niben101Scf01209g05011.1 131 GNSRF--SVFIF 140
                               *9999..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-2248143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2250150IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.40650143IPR003340B3 DNA binding domain
CDDcd100171.59E-1751141No hitNo description
SMARTSM010199.2E-1253143IPR003340B3 DNA binding domain
PfamPF023622.9E-1153139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSPDEGIDFS RCSLNKQNFN ITLPHEAQTA EKVERRLPEE PKSVDSPEAP PQFFKVILSP  60
HASKLHIPDE FMMEYGDNLQ DLVSLEVPNG AIWKVKLHNC SGTAWFKEGW NKFKEYYSIG  120
CGYFLLFRYN GNSRFSVFIF DLSASEIDYP PGPNEDEISP SLNEDLTPEI SPGQNEDLTP  180
ENLCVVAEPE GNPLTCQENS CAETLLTISQ PSRPNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483682.11e-138PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A1S4B4301e-137A0A1S4B430_TOBAC; B3 domain-containing protein At1g49475-like
STRINGXP_009603775.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-28B3 family protein