PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01212g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 428aa    MW: 48692.8 Da    PI: 4.8022
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01212g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.47.8e-3295183270
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................s 66 
                               +g+kdrhsk++T++g+RdRRvRls ++a++f+d+qd+LG+d++s++i+WL+++ak ai++l +                     +
  Niben101Scf01212g00003.1  95 TGRKDRHSKVSTAKGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSEAIDWLIKEAKVAIDALGKFpklnakiqysfdqlldegciE 179
                               79***********************************************************988767666666655555554432 PP

                       TCP  67 sssa 70 
                               +s+ 
  Niben101Scf01212g00003.1 180 QSPR 183
                               2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3095177IPR005333Transcription factor, TCP
PROSITE profilePS5136930.48697155IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNHQLQISDE EDGSSEEEEE DEEEVFQENG IENLYSDCQN QNLQQLPMPL CPKPAKWANF  60
TTYKEELNKV TKGMKPKRTK QDVIEVQRGR IIRSTGRKDR HSKVSTAKGP RDRRVRLSPN  120
TAIQFYDVQD RLGYDRPSEA IDWLIKEAKV AIDALGKFPK LNAKIQYSFD QLLDEGCIEQ  180
SPRFSQQNSE YGVQNHQQEV NYDIPIQNVS LFSSADGVKI PFLSEYQSYS HGHFLNFQSF  240
QEDTILSSGD HQDSFLTSSF PIYTNSNLEM TRYKRSLNGN VASSNSGNGE DYSSFSLVAH  300
HFPSVLSQNQ VISHREPLQS SLFPLISGDP WSTQLQTLSY DGFSGQISTK VAIDALGKFP  360
KLNAKIQYSF DQLLDEGCIE QSPRFSQQNS EYGVQNHQQE VNYDIPIQNV SLFSSADGVK  420
IPFLSEYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18102155154Putative transcription factor PCF6
5zkt_B1e-18102155154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794860.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016484781.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S4B7C50.0A0A1S4B7C5_TOBAC; transcription factor TCP4-like
TrEMBLA0A1U7Y7R50.0A0A1U7Y7R5_NICSY; transcription factor TCP4-like
STRINGXP_009794860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-37TCP family protein