PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01218g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 154aa    MW: 17998.7 Da    PI: 10.213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01218g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.2e-17121163104
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                               +G+rFhPt+ el+ ++Lk+ ++g++l+ e   +++vdiy    Pw++  ++ ++ eek  yf ++ +k++++ +r +r+ ++g+W
  Niben101Scf01218g01003.1  12 MGVRFHPTEAELI-NFLKRFLKGEPLPSECPnFRHVDIYGDqPPWEIFgTNSDHpEEKVRYFLTRLKKQKSEYTRVRRTCANGTW 95 
                               7************.9**********8875556*******87368***7333333244455999999999999************* PP

                       NAM  84 katgkdkevlskkgelvglkk 104
                               k + k  +v++ kg++vg ++
  Niben101Scf01218g01003.1  96 KVQTKGFPVKNGKGTVVGFRR 116
                               ***********9999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.46410154IPR003441NAC domain
SuperFamilySSF1019418.5E-1810119IPR003441NAC domain
PfamPF023651.3E-812116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSSLPVHREC IMGVRFHPTE AELINFLKRF LKGEPLPSEC PNFRHVDIYG DQPPWEIFGT  60
NSDHPEEKVR YFLTRLKKQK SEYTRVRRTC ANGTWKVQTK GFPVKNGKGT VVGFRRGYCS  120
LPNQEEQKIR EKLWGKYGGT RCCQRGRSYV AWTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801092.13e-72PREDICTED: NAC domain-containing protein 90-like
RefseqXP_016510918.13e-72PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A1S4DC458e-71A0A1S4DC45_TOBAC; NAC domain-containing protein 53-like
TrEMBLA0A1U7YAE38e-71A0A1U7YAE3_NICSY; NAC domain-containing protein 90-like
STRINGXP_009801092.11e-71(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-09NAC domain containing protein 2