PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01221g13007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 258aa    MW: 30579.6 Da    PI: 9.7599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01221g13007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.7e-191360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Niben101Scf01221g13007.1 13 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 60
                              79******************************9*************97 PP
2Myb_DNA-binding51.91.7e-1666110147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Niben101Scf01221g13007.1  66 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110
                               7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.493864IPR017930Myb domain
SuperFamilySSF466891.04E-3011107IPR009057Homeodomain-like
SMARTSM007174.1E-171262IPR001005SANT/Myb domain
PfamPF002491.6E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-241467IPR009057Homeodomain-like
CDDcd001678.69E-121560No hitNo description
SMARTSM007176.4E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129419.61665115IPR017930Myb domain
PfamPF002497.3E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2468114IPR009057Homeodomain-like
CDDcd001677.80E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGNWGIIEES WRKGPWTAEE DRLLIEYVKL HGEGRWNSVA RLTGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH FKKKTKTSCV  120
SSEKSRARLW KKQHFQQQQQ LQQQQQQQQI NNQIDIKRVM SLFDHYENKV PTMQPKQEMT  180
ILYQNSVDQQ NQVGLFYSML NGCSSVSVPE PSSVEDIMWD GLWNLDDFYG QFINTTTYNK  240
TITTPNCLQT MDTTTAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795062.11e-146PREDICTED: transcription factor MYB21-like
RefseqXP_016493463.11e-146PREDICTED: myb-related protein 305-like
TrEMBLA0A1S4BX881e-144A0A1S4BX88_TOBAC; myb-related protein 305-like
TrEMBLA0A1U7XSM81e-144A0A1U7XSM8_NICSY; transcription factor MYB21-like
STRINGXP_009795062.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.16e-80myb domain protein 305