PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01241g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 135aa    MW: 15541.7 Da    PI: 10.1144
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01241g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13e-312073255
                   G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                              prlrWtp LH++F+ a+++LGG++kAtPk +le+m+v gLt++hvkSHLQ+YR+
  Niben101Scf01241g03010.1 20 PRLRWTPHLHQCFLLAIQKLGGHHKATPKLVLEMMDVRGLTISHVKSHLQMYRS 73
                              8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7651676IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-301676IPR009057Homeodomain-like
SuperFamilySSF466892.87E-151876IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-252074IPR006447Myb domain, plants
PfamPF002493.1E-82172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGKCERNNGG VTQYKRSKVP RLRWTPHLHQ CFLLAIQKLG GHHKATPKLV LEMMDVRGLT  60
ISHVKSHLQM YRSMKSNVNW QEAGGGERSK GKESVEDDNS HHQQEEKVLR YHSCCGPTSE  120
RSESPFFYNP LPTKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258511.14e-77PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
RefseqXP_019258513.12e-77PREDICTED: putative Myb family transcription factor At1g14600 isoform X3
SwissprotQ700D97e-29MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A314LFE31e-75A0A314LFE3_NICAT; Putative myb family transcription factor
STRINGXP_009610208.15e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54332238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-31G2-like family protein