PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01253g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 270aa    MW: 29952.7 Da    PI: 9.4018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01253g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13203248655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Niben101Scf01253g00005.1 203 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 248
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16200261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-12201250No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDGGGYRVMG SLGNNHETQN KMASNLMRQN SSPAGLFSHL NSQIGYGTLK GGGVGGYRMA  60
NGGTVDSSPS SSRLKGHFSS FPSWAPSSLG MLSRISEVDN ESSITTVPDD DKHRDGNSEA  120
QFYNMGFPFT SWRDSPQLNN EGKLFANADQ IEEVGNRPPI LSHHLSLPKT PTEIAAIEKL  180
LHFQDTIPCK IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA  240
VEYIKDLQRQ YKTLTDHRAN CKCSAMQKPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254900.10.0PREDICTED: transcription factor bHLH130 isoform X1
SwissprotQ66GR37e-74BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1J6ICI00.0A0A1J6ICI0_NICAT; Transcription factor bhlh130
STRINGXP_009591238.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]