PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01258g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 125aa    MW: 14996.2 Da    PI: 10.5891
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01258g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.52.2e-135484891
                      FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                              +ek  r+raetr+gC+a++ v+k ++g+w+vtk+++eH+H+l+p
  Niben101Scf01258g01001.1  5 REKIVRQRAETRVGCRAMILVRKVSSGRWVVTKFVKEHTHPLSP 48
                              367889***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-10648IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MPDKREKIVR QRAETRVGCR AMILVRKVSS GRWVVTKFVK EHTHPLSPGK GRRDLIYDQY  60
PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ SVSKKIQDIV HNVREMESRD  120
QHHHR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605656.11e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_009605657.11e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_016478794.11e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_016478795.11e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_019226846.11e-86PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S4AQ333e-85A0A1S4AQ33_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1S4AQF22e-85A0A1S4AQF2_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A314KR191e-84A0A314KR19_NICAT; Protein far1-related sequence 5
STRINGXP_009605656.15e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-64FAR1 family protein