PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01258g02009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 195aa    MW: 21499.4 Da    PI: 4.6553
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01258g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.39.9e-06434535
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                               C+ +e+ +++  C  ++  lC++C  e H 
  Niben101Scf01258g02009.1  4 QCDVCEKAQATVICCADEAALCAKCDIEVHA 34
                              7******99*******************995 PP
2zf-B_box18.44.6e-0642701638
                  zf-B_box 16 lfCedCqqllCedClleeHkg......Ht 38
                              +fC +++ l+C+dC +++H+       H+
  Niben101Scf01258g02009.1 42 IFCVEDRALFCKDCDEAIHSAsslaanHQ 70
                              5******************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000215.19E-5335No hitNo description
SMARTSM003367.9E-82074IPR000315B-box-type zinc finger
CDDcd000210.002444373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKIQCDVCEK AQATVICCAD EAALCAKCDI EVHAANKLAT FIFCVEDRAL FCKDCDEAIH  60
SASSLAANHQ RFLATGIRVA LSSSCNKDAV KTQLDPPQPP QQNSQQVCLK MPPHQLSSIT  120
SPSWPKELLE LGELEWLGAI DLFGEQTAAE VPELSVSQAG NTHNIYKPTR YQMSYKKPRI  180
EIPDDDEYFT VPDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500562.11e-104PREDICTED: B-box zinc finger protein 24-like isoform X1
SwissprotQ9SID11e-65BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A2G2WMD71e-105A0A2G2WMD7_CAPBA; B-box zinc finger protein 24
TrEMBLA0A2G3CAJ31e-105A0A2G3CAJ3_CAPCH; B-box zinc finger protein 24
STRINGXP_009787482.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54102233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.12e-55salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]