PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01272g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 362aa MW: 40498.4 Da PI: 7.2222

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01272g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.5	1e-17	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v++ +l++p+kf++++ +k + t++l de+ +++ k+ ++k++ l++GW++F a++L egD++vF+l+ Niben101Scf01272g00005.1 89 FVKYMLHSHVSRGFWLSFPRKFCASYL-PK-HDDTVVLVDENEEEFAAKYLIDKNG----LSGGWRGFSIAHNLLEGDILVFQLI 167 8999********************4.33.3459***********889998....*********************** PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +f +v ++r+ Niben101Scf01272g00005.1 168 QPCKF--KVYIIRE 179 98888..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-20	83	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-24	83	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.90E-27	87	178	No hit	No description
SMART	SM01019	7.4E-21	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-16	89	179	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.956	89	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAISAMNSSK KSPLLSSSKK KALEIKEKLL RKGALGPSKT NKVKNGDTKK LQICPEKKTY 60 KTSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLHSHVSR GFWLSFPRKF CASYLPKHDD 120 TVVLVDENEE EFAAKYLIDK NGLSGGWRGF SIAHNLLEGD ILVFQLIQPC KFKVYIIREN 180 NLTEIDGAIS LLYLDLHARP IKSDQIVDMK ICEAKERKYL EPPILGTHQD VKQEEAILIP 240 DSNQGPASDQ CENDSDNSSE VLSIRFSESR LEFKDVKDLS GFNILVDGLI IDAEIPAHIR 300 TKYYNLCCTQ NSFLHDHLLG GLNCKLAAGM VTETVNIADA IKASKISIPR DYLDTWDNTL 360 KG

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAISAMNSSK KSPLLSSSKK KALEIKEKLL RKGALGPSKT NKVKNGDTKK LQICPEKKTY  60
KTSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLHSHVSR GFWLSFPRKF CASYLPKHDD  120
TVVLVDENEE EFAAKYLIDK NGLSGGWRGF SIAHNLLEGD ILVFQLIQPC KFKVYIIREN  180
NLTEIDGAIS LLYLDLHARP IKSDQIVDMK ICEAKERKYL EPPILGTHQD VKQEEAILIP  240
DSNQGPASDQ CENDSDNSSE VLSIRFSESR LEFKDVKDLS GFNILVDGLI IDAEIPAHIR  300
TKYYNLCCTQ NSFLHDHLLG GLNCKLAAGM VTETVNIADA IKASKISIPR DYLDTWDNTL  360
KG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778966.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1U7WNT8	0.0	A0A1U7WNT8_NICSY; B3 domain-containing protein Os01g0234100-like
STRING	XP_009612763.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-41	B3 family protein