PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01272g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 213aa    MW: 24230.8 Da    PI: 9.7193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01272g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-15101190198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f k +++s+v++  +l lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    l++GW++F  a +L egD++vF+l 
  Niben101Scf01272g00016.1 101 FMKPMIRSNVTAGLWLFLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLARNLVEGDVLVFQLF 179
                               899********************8884..35678****************555555....9**********************86 PP

                               SSSEE..EEEEE- CS
                        B3  86 grsefelvvkvfr 98 
                               +  +  l+v ++r
  Niben101Scf01272g00016.1 180 RFCK--LKVYIVR 190
                               5344..4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045201.2E-8954IPR007608Senescence regulator S40
Gene3DG3DSA:2.40.330.101.5E-1793192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2094192IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-2099190No hitNo description
SMARTSM010191.2E-16101192IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829101192IPR003340B3 DNA binding domain
PfamPF023623.5E-13101191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MCNGVKMIPK SNKNSIHEQK IAQQSAPVNI PDWSKIYGTS SKKTSWHDGN NDDSGGGGYS  60
FLCKKKMEMM QSLYGRFDLA SSSKYRAEEV QSKLSTKYPS FMKPMIRSNV TAGLWLFLPR  120
FFCQLHLPRH DTTVTLVDES QEEYKTKYLA ERNGLSGGWR GFSLARNLVE GDVLVFQLFR  180
FCKLKVYIVR ANYLAEVDAV PCSSAFRCPS KTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258001.12e-92PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X3
RefseqXP_019258002.12e-92PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X3
TrEMBLA0A1J6IMH74e-91A0A1J6IMH7_NICAT; B3 domain-containing protein
STRINGXP_009778967.17e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-42B3 family protein