PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01272g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 227aa MW: 26565.4 Da PI: 8.3855

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01272g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.4e-16	132	221	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v+ +l lp +f+++h k ++ +tl de+ ++e k+ k++ l++GW++F+ +++L +gD +vF+l+ Niben101Scf01272g01010.1 132 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFETKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLI 210 89*******************999423..4457***********666665....9*********************9 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + ++f +v ++r Niben101Scf01272g01010.1 211 EPTKF--KVYIIR 221 87777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.4E-20	123	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-24	125	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.42E-25	130	221	No hit	No description
PROSITE profile	PS50863	11.575	132	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.1E-14	132	221	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-21	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVESKKKMLA YEESRLKRLE ENKKRMEELN LSKLVQAVRT ATSPKPSPMK KVKPRVKQEI 60 DLSAVRRSNR VADKPPPNYK DIIYALHFDF LVYSYKRRDL LNRVYADDED RQYAIERAEQ 120 LQSEIDADFP SFVKPMLQSH VTGGFWLGLP VHFCNTHLPK RDEFVTLIDE NEDEFETKYL 180 ALKRGLSGGW RGFAIDHELV DGDALVFQLI EPTKFKVYII RVNQTED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772546.1	1e-151	PREDICTED: B3 domain-containing protein At3g19184-like
Refseq	XP_016513011.1	1e-151	PREDICTED: B3 domain-containing protein At3g19184-like
Refseq	XP_019257395.1	1e-151	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	3e-84	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1J6HTZ8	1e-150	A0A1J6HTZ8_NICAT; B3 domain-containing protein
TrEMBL	A0A1S4DHZ2	1e-150	A0A1S4DHZ2_TOBAC; B3 domain-containing protein At3g19184-like
TrEMBL	A0A1U7W5R2	1e-150	A0A1U7W5R2_NICSY; B3 domain-containing protein At3g19184-like
STRING	XP_009772546.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-83	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]