PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01277g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 308aa MW: 35096.7 Da PI: 7.032

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01277g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	21	139	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++++ +i evd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka Niben101Scf01277g00002.1 21 LPPGFRFHPTDEELITHYLSKKVVDTDFSA-IAIGEVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKA 104 79***********************999.88***********98999**************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121 tgkdke+++ +++lvg+kktLvfykgrapkgekt+W Niben101Scf01277g00002.1 105 TGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNW 139 *****.999********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-54	16	150	IPR003441	NAC domain
PROSITE profile	PS51005	45.685	21	165	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	22	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MMMENFSGVV KEDDQQQQMD LPPGFRFHPT DEELITHYLS KKVVDTDFSA IAIGEVDMNK 60 VEPWELPWKA KIGEKEWYFF CVRDKKYPTG LRTNRATAAG YWKATGKDKE IFRGKSLVGM 120 KKTLVFYKGR APKGEKTNWN DWVICRVFQK TTGGKKIHIS GLMQSNSTGN EMGNSLLPPL 180 TDSSPSHVHC FSNFLTAQKS EENMINYFNT SPNFAPLSNP IDIFPRNSVP NTFSWNQTVP 240 FPQPGSFPVQ DPVSLRNLLE NYGQNMQQSF KKEKDMVSVS QETGLSTDIN TEITSSVIQQ 300 DLDCLWTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	10	156	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	10	156	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	10	156	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	10	156	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	10	156	9	174	NAC domain-containing protein 19
3swm_B	6e-52	10	156	9	174	NAC domain-containing protein 19
3swm_C	6e-52	10	156	9	174	NAC domain-containing protein 19
3swm_D	6e-52	10	156	9	174	NAC domain-containing protein 19
3swp_A	6e-52	10	156	9	174	NAC domain-containing protein 19
3swp_B	6e-52	10	156	9	174	NAC domain-containing protein 19
3swp_C	6e-52	10	156	9	174	NAC domain-containing protein 19
3swp_D	6e-52	10	156	9	174	NAC domain-containing protein 19
4dul_A	5e-52	10	156	6	171	NAC domain-containing protein 19
4dul_B	5e-52	10	156	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767926.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-110	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U7VSJ3	0.0	A0A1U7VSJ3_NICSY; NAC domain-containing protein 100-like
STRING	XP_009767926.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-104	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]