PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01295g05008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 491aa    MW: 51627 Da    PI: 8.263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01295g05008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-125377327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H++
  Niben101Scf01295g05008.1 53 EPDCIYYLRTGFCGYGARCRFNHPR 77
                              799********************96 PP
2zf-CCCH375.6e-1299123327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G++Ck++H++
  Niben101Scf01295g05008.1  99 QPVCQYYMRTGMCKFGASCKYHHPR 123
                               689********************96 PP
3zf-CCCH32.21.8e-10145168326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               +++C+++ +tG+Ck+G +CkF+H+
  Niben101Scf01295g05008.1 145 EKECSYYVKTGQCKFGISCKFHHP 168
                               689********************8 PP
4zf-CCCH375.5e-12314340127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G CkyG++C+++H+p
  Niben101Scf01295g05008.1 314 PGQPECQYYMKYGDCKYGSSCRYHHPP 340
                               5789*********************97 PP
5zf-CCCH35.61.6e-11362386327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Niben101Scf01295g05008.1 362 APICSHYAQNGVCKFGPSCKFDHPM 386
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-65077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6525078IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-95377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55677IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55496124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-699123IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-899123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5101123IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6143170IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8145168IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389313341IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4319340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6358385IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878359387IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MERYSGTQSM EVGAPVDPVS EWTVPGGEPG LEEPMWQLSL NTGPESYPER PNEPDCIYYL  60
RTGFCGYGAR CRFNHPRDRN SVLGAMRTMG GEYPERVGQP VCQYYMRTGM CKFGASCKYH  120
HPRQGGGSPA PVTVNIYGYP LRLGEKECSY YVKTGQCKFG ISCKFHHPHP AGAQMPAPAA  180
GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWSV ARPTLLPGSY IPGTYGSMLL  240
PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYMGP YLSVASASGP  300
SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP  360
GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLADM AVAPYPVGSS IGTLAPSSSS  420
SDLRPELVSG SGRDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SSHPSSGSSS  480
ASHGGQARTS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226016.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-160C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A314KSJ40.0A0A314KSJ4_NICAT; Zinc finger ccch domain-containing protein 34
STRINGXP_009588295.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]