PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01308g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 299aa    MW: 34791.2 Da    PI: 6.5746
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01308g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.42.1e-33110203166
                       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                               a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak ai++l ++                    
  Niben101Scf01308g00014.1 110 ATGRKDRHSKVSTASGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKDAIDALENNpfqvfstkidssnkalnwrt 194
                               589**************************************************************88888874443333333333 PP

                       TCP  66 ........s 66 
                                       +
  Niben101Scf01308g00014.1 195 inteneegQ 203
                               322222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-30111221IPR005333Transcription factor, TCP
PROSITE profilePS5136930.037113171IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNHQLQILDE EYKSSEEEEK EKEEDVFQEN ILPNHYQNHH FHQFCQIHAD SHDAKWPNFT  60
SPSATFVPKH QNNTQCPSYK QEIKNVSPRK KPKRTNTDVI EVHRSRIVRA TGRKDRHSKV  120
STASGPRDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAKDAIDA LENNPFQVFS  180
TKIDSSNKAL NWRTINTENE EGQFFLEQSP KVSQEYSDIP KYECGVQNDS PNGNLSLFSS  240
VNDAKIQSVS DFQMYQQCHF HSEIKNQAQG NFYNFQSSQN ELREDSTFSF LSHNFPSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-19118171154Putative transcription factor PCF6
5zkt_B3e-19118171154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443396.10.0PREDICTED: transcription factor TCP3-like
TrEMBLA0A1S3XTX70.0A0A1S3XTX7_TOBAC; transcription factor TCP3-like
STRINGXP_009771449.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-36TCP domain protein 10