PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01310g04008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 73aa MW: 8516.98 Da PI: 10.3971

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01310g04008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.2	9.2e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Niben101Scf01310g04008.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.613	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.0E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.51E-40	2	61	No hit	No description
SuperFamily	SSF55455	3.01E-32	2	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS 60 SRDVIATFYW RID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	1	69	1	69	MEF2C
5f28_B	2e-21	1	69	1	69	MEF2C
5f28_C	2e-21	1	69	1	69	MEF2C
5f28_D	2e-21	1	69	1	69	MEF2C
6byy_A	1e-21	1	69	1	69	MEF2 CHIMERA
6byy_B	1e-21	1	69	1	69	MEF2 CHIMERA
6byy_C	1e-21	1	69	1	69	MEF2 CHIMERA
6byy_D	1e-21	1	69	1	69	MEF2 CHIMERA
6bz1_A	1e-21	1	69	1	69	MEF2 CHIMERA
6bz1_B	1e-21	1	69	1	69	MEF2 CHIMERA
6bz1_C	1e-21	1	69	1	69	MEF2 CHIMERA
6bz1_D	1e-21	1	69	1	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773225.1	2e-37	PREDICTED: MADS-box protein CMB1-like isoform X3
Refseq	XP_016498123.1	2e-37	PREDICTED: MADS-box protein CMB1
Swissprot	O04067	9e-36	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	A0A2G5F5F0	9e-37	A0A2G5F5F0_AQUCA; Uncharacterized protein
STRING	Aquca_002_00913.1	1e-37	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-38	MIKC_MADS family protein

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]