PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01326g04010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 408aa MW: 46158.2 Da PI: 5.3311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01326g04010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.6e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wka Niben101Scf01326g04010.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLSI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579*************************.89***********9888999************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Niben101Scf01326g04010.1 98 TGTDRPIYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 *****955666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-57	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	14	173	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MDNKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LSIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTNIESAQ PKKFLDRNFP PNDSWAICRI FKKTNSMANR 180 ALSYPWINPL SEVASPDVFN QSTTVHFGSQ NISSLTETGS LLHLSSNNDL LQGASNVPSY 240 KTFNAIVSRP SFLSSPSTEV PCNIMFSSPE VSMFFNTSPA LIADDIKTSE TIDFEGSNQQ 300 MNSFSISSSQ EMQRSIGMED DEGGLRSNQD STNXQRSIGM EDDETGLKSN QDSANNNTTQ 360 WENIRSIGFP FSLTTSLADE WKPSLSWDSP SCPSEISTTY DSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MDNKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LSIELIKQVD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTNIESAQ PKKFLDRNFP PNDSWAICRI FKKTNSMANR  180
ALSYPWINPL SEVASPDVFN QSTTVHFGSQ NISSLTETGS LLHLSSNNDL LQGASNVPSY  240
KTFNAIVSRP SFLSSPSTEV PCNIMFSSPE VSMFFNTSPA LIADDIKTSE TIDFEGSNQQ  300
MNSFSISSSQ EMQRSIGMED DEGGLRSNQD STNXQRSIGM EDDETGLKSN QDSANNNTTQ  360
WENIRSIGFP FSLTTSLADE WKPSLSWDSP SCPSEISTTY DSTNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-53	16	176	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600694.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-103	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S4CAZ4	0.0	A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94
STRING	XP_009600694.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-105	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]