PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01326g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25039.8 Da    PI: 6.796
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01326g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97e-1893146356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Niben101Scf01326g07001.1  93 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 146
                               4557899**********************************************9 PP
2HD-ZIP_I/II121.44.5e-3992166175
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                               ekkrrl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+ydalke
  Niben101Scf01326g07001.1  92 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDALKE 166
                               69**********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1989150IPR009057Homeodomain-like
SMARTSM003895.8E-1791152IPR001356Homeobox domain
PROSITE profilePS5007116.47192148IPR001356Homeobox domain
PfamPF000463.9E-1593146IPR001356Homeobox domain
CDDcd000862.10E-1693149No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1895155IPR009057Homeodomain-like
PRINTSPR000311.1E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5128144IPR000047Helix-turn-helix motif
PfamPF021831.5E-7148165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLSSTTGIMA LVPSTPEISI NFQDNHNIPS TSPKVFPSPC NIPHQDFNGI SSMLMRRSMS  60
FSGVERCDNH QDLRVDDNEM SDDDGSSQLL GEKKRRLNLE QVKALERSFE VANKLEPERK  120
IQLARALGLQ PRQIAIWFQN RRARWKTKQL ERDYEILKRQ YDALKESGGG GAPMINLNKE  180
NEGSWSNGSE ENNSIDVNFG TTTATRTSSG DSPFYSNNNK NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018632952.11e-146PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X2
SwissprotQ8LC035e-52ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1S3ZMJ31e-144A0A1S3ZMJ3_TOBAC; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_009624441.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-48HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]