PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01337g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 193aa    MW: 22424.9 Da    PI: 9.2977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01337g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.2e-19171462127
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G  F+Ptd e++ +yL   v++++l++++  ++++d+y   ePw++ ++++   ++k  yf ++++k++++ k  +r++ +g+
  Niben101Scf01337g00001.1  17 PMGNLFRPTDREVL-KYLLGFVRDERLPCQNElMQQTDLYADkEPWQIFEAYDDhgTNKTRYFITPQKKEKSRRKSVTRTIGKGI 100
                               78999*******99.9**********8887766999**997559****7433332144466******999999************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127
                               Wk   k  ++++ kg+l+g  k+L +   +++ + +  +W+m ey+
  Niben101Scf01337g00001.1 101 WKPLSKGLALFDDKGRLMGFVKSLKYIpANKSTNNVYGEWFMTEYS 146
                               ***************************6568888899********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-2111161IPR003441NAC domain
PROSITE profilePS5100519.81316170IPR003441NAC domain
PfamPF023653.1E-1017146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTTYSDHRAM GCSSRYPMGN LFRPTDREVL KYLLGFVRDE RLPCQNELMQ QTDLYADKEP  60
WQIFEAYDDH GTNKTRYFIT PQKKEKSRRK SVTRTIGKGI WKPLSKGLAL FDDKGRLMGF  120
VKSLKYIPAN KSTNNVYGEW FMTEYSSYDC YLDAREIKNK GFVVLNMIGI PCARFAVGVF  180
IIRCPSCEVE FAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224265.12e-95PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A314KVH51e-100A0A314KVH5_NICAT; Uncharacterized protein
STRINGXP_009598748.17e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-08NAC-domain protein 101