PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01350g04013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 430aa    MW: 47164.4 Da    PI: 7.4675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01350g04013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1389136455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Niben101Scf01350g04013.1  89 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136
                               56678*********************6....39******************9 PP
2HLH12.20.000332732903855
                               STCHHHHHHHHHHHHHHH CS
                       HLH  38 lsKaeiLekAveYIksLq 55 
                                +K++i+ +Av+YIk Lq
  Niben101Scf01350g04013.1 273 ADKSTIVDEAVNYIKTLQ 290
                               58***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.15785135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1685153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-1488140No hitNo description
Gene3DG3DSA:4.10.280.108.8E-1588147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1090136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-993141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.75E-7223291No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-6224296No hitNo description
PROSITE profilePS516719.66227318IPR002912ACT domain
CDDcd048734.01E-6228266No hitNo description
SMARTSM003536.4244295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.33E-6377425No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-5378424No hitNo description
PROSITE profilePS516719.774381430IPR002912ACT domain
CDDcd048734.01E-6382420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDEGGEDCFI WENQGWGFLN SDNSGGNEAK SSGTKLPDTS QLAVSDGFAR EIEMAGPSAG  60
RKRSANGVKV NGDVNEGKVN GGGESDHEMH IWTERERRKK MRNMFSNLHA LLPQLPPKAD  120
KSTIVDEAVN YIKTLQHTLQ KLQRQKLERL HGMATSMNPS IITSHKLSAD SIISREAFLA  180
DQGSTNNAAI SPTNNAANPI SMSHFPAVFQ SWTSPNVILN VCGEEAHISV CCPKKPGLLS  240
SICYVLEKHK IEVVSAQISS YDHRSMYMIQ AHADKSTIVD EAVNYIKTLQ HTLQKLQRQK  300
LERLHGMATS MNPSIITSHK LSADSIISRE AFLADQGSTN NAAISPTNNA ANPISMSHFP  360
AVFQSWTSPN VILNVCGEEA HISVCCPKKP GLLSSICYVL EKHKIEVVSA QISSYDHRSM  420
YMIQAHSLSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800782.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1U7Y9I30.0A0A1U7Y9I3_NICSY; transcription factor bHLH95-like
STRINGXP_009800782.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-49bHLH family protein