PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01362g04017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 477aa    MW: 52457 Da    PI: 6.9909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01362g04017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.6e-29218276259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Niben101Scf01362g04017.1 218 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCVEDMSILITTYEGTHNHS 276
                               8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30202278IPR003657WRKY domain
SuperFamilySSF1182901.44E-25209278IPR003657WRKY domain
PROSITE profilePS5081127.405212278IPR003657WRKY domain
SMARTSM007743.9E-34217277IPR003657WRKY domain
PfamPF031062.6E-25218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEKKLDNTIT KTVVARNQGN NYEEEEAVGK DLKDDEFKSA IAEANELRLE NSRLRTLLEQ  60
IQKDYNSLQT RFSQPEFNKS SSPTCTTENV AEEESELVSL RLGRSPNGNV QYKKDDKKRH  120
SCQPSDGLQL GLDYNIEVSE SDPVKPNTDP SPDNMLETKT VDARETSRPT NEVMRRGDNE  180
VSHPSPSTKR AGDDEVSQPN VKRARVSVRT KCDYPTINDG CQWRKYGQKI SRGNPCPRSY  240
YRCSVAPLCP VRKQVQRCVE DMSILITTYE GTHNHSLPIE ATAMASTTSA AASMLLSASS  300
SSQSANKDLR NLPNNSKTTP LYLSNSPSNS NPFPTITLDF TTFPTTSSFT SFNFPSNFQS  360
NTGFLSNSLN FSSPEPDTLS KILGSGYVDY DSTTTLPYSK ILANIGSSNL GRPSPAHKQF  420
DQLILGKNNK SSSSNNLKEN SSQQALTETL TKAIASDPSF QTVLAAAISS MVGATKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22204278174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258570.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A314LFD10.0A0A314LFD1_NICAT; Putative wrky transcription factor 72
STRINGXP_009600779.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-55WRKY DNA-binding protein 72