PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01365g06013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 465aa    MW: 53287 Da    PI: 6.8786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01365g06013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.61.6e-91854611373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++ Ll  A+av+++++  a + L +l +++s  gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f+
  Niben101Scf01365g06013.1  85 LIHSLLISATAVDDNSFDSAVEDLHELYQNVSILGDSVQRVAAYFADGLIARLLTRNSPFYDMIMKLPTQ----EEEFLAFTEFY 165
                               57999999***********************************************9*****999888886....78889999*** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163
                               +vsP+++f+h+t NqaIle +e+e       +H+iDfdis+G+QWp+L+q+L++ +  ++  sl+iTg g+      +el+et+ 
  Niben101Scf01365g06013.1 166 KVSPFYQFAHFTSNQAILETFEKEektnnGLLHVIDFDISYGFQWPSLIQSLSENAttSKRISLKITGYGK----TIDELRETET 246
                               ***********************955544456*********************988656667*********....99******** PP

                      GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               rL +fA+ + +++fef+ +    l+  +l++L  +++E+laVnl+++l +l   s    s+++++Lk v sl P +v +veqe  
  Niben101Scf01365g06013.1 247 RLVSFAKGFrNISFEFQGV----LSGSKLNNLIKRKNETLAVNLMFHLNSLS--SY---SKISHTLKEVHSLCPSIVNIVEQEGC 322
                               *******9758*******7....77888999*9999**********999997..33...33568********************* PP

                      GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse 331
                                + ++Fl rf+e+l+y++a+fdsl+  lp +s er  +E+  lg+ei+nv+  e+++    rhe++e+Wr r+e+ GF  +pls+
  Niben101Scf01365g06013.1 323 KSPQNFLPRFMESLHYFAAMFDSLDDCLPIDSIERLRIEKNHLGKEIKNVLNYEKNNnFLSRHEQMETWRGRMESHGFLGLPLSS 407
                               ******************************************************9993569************************ PP

                      GRAS 332 kaakqaklllrkvk.sdgyrve...........eesgslvlgWkdrpLvsvSaW 373
                               k+ +qaklll+  + s   +++           e+  ++ l W+dr++v++SaW
  Niben101Scf01365g06013.1 408 KNIMQAKLLLKIRShSSPIQIDggnggfrifetEDPRAISLAWQDRSIVTASAW 461
                               **********977644444444444444444544455566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.38459430IPR005202Transcription factor GRAS
PfamPF035145.6E-8985461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGDIVDQEEE LLCLRLAIVR NSCCERKKIK KRKRKELAFI NTWDLNESNY CEGKIFNLLE  60
LRESMLKIDV KKKGSVVEDG KGLHLIHSLL ISATAVDDNS FDSAVEDLHE LYQNVSILGD  120
SVQRVAAYFA DGLIARLLTR NSPFYDMIMK LPTQEEEFLA FTEFYKVSPF YQFAHFTSNQ  180
AILETFEKEE KTNNGLLHVI DFDISYGFQW PSLIQSLSEN ATTSKRISLK ITGYGKTIDE  240
LRETETRLVS FAKGFRNISF EFQGVLSGSK LNNLIKRKNE TLAVNLMFHL NSLSSYSKIS  300
HTLKEVHSLC PSIVNIVEQE GCKSPQNFLP RFMESLHYFA AMFDSLDDCL PIDSIERLRI  360
EKNHLGKEIK NVLNYEKNNN FLSRHEQMET WRGRMESHGF LGLPLSSKNI MQAKLLLKIR  420
SHSSPIQIDG GNGGFRIFET EDPRAISLAW QDRSIVTASA WHCVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-529346127378Protein SCARECROW
5b3h_A2e-529346126377Protein SCARECROW
5b3h_D2e-529346126377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12634KKIKKRKRK
22934KKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224979.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A314KU170.0A0A314KU17_NICAT; Protein scarecrow
STRINGXP_009792508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.17e-58SCARECROW-like 21