PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01372g06020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 195aa    MW: 22304.7 Da    PI: 9.5275
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01372g06020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.81.7e-30257460
               ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                              v+YkeClkNhA+++Gg+a+DGCgEfmps geegt + l+C+ C+CHRnFHR+e+e e
  Niben101Scf01372g06020.1  2 VKYKECLKNHAVAMGGNATDGCGEFMPS-GEEGTLELLTCSVCNCHRNFHRKETEGE 57
                              79*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-25258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-28254IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.2E-30353IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.311453IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-17114183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27117184IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-25122178IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVKYKECLKN HAVAMGGNAT DGCGEFMPSG EEGTLELLTC SVCNCHRNFH RKETEGELIR  60
NVYVGHPHKA FVYPTSRAAP HQMIMSYNNH MGPIPGINQE DGIINVGCGA MVRPLNHQQF  120
VKKRFRTKFS QEQKEKMLNF AEKIGWKMQK QEEAMVQQFC QQVGIKRRLL MVWMHNNKHN  180
LAKKNSNGIN TESQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211231801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762039.11e-128PREDICTED: zinc-finger homeodomain protein 4-like isoform X1
RefseqXP_016437760.11e-128PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S02e-69ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S3XCV11e-126A0A1S3XCV1_TOBAC; zinc-finger homeodomain protein 4-like
TrEMBLA0A1U7VI871e-126A0A1U7VI87_NICSY; zinc-finger homeodomain protein 4-like isoform X1
STRINGXP_009762039.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-71homeobox protein 31