PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01372g07005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 157aa    MW: 18064 Da    PI: 5.674
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01372g07005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.21e-36391312103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d+++++++sws+ +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Niben101Scf01372g07005.1  39 FLTKTYELVDDANTNDIVSWSRGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGF 114
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll+ i+r+k++
  Niben101Scf01372g07005.1 115 LRGQRHLLKAIRRRKTS 131
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3932123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3534128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDPNFAPIKE EFPGSSEASS FMWFPQPMEG LHENGPPPFL TKTYELVDDA NTNDIVSWSR  60
GNNSFIVWDP QTFAMNLLPR YFKHSNFSSF VRQLNTYGFR KVNPDQWEFA NEGFLRGQRH  120
LLKAIRRRKT SNFYPGQASN QGFDDGTGEA YTTAADY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-263713118123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797496.11e-100PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_009797497.11e-100PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-66HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U7Y6B55e-99A0A1U7Y6B5_NICSY; heat stress transcription factor A-6b-like
STRINGXP_009797496.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-69heat shock transcription factor A6B