PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01374g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 246aa    MW: 27174 Da    PI: 4.7188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01374g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1866115255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr ++ +g+Wv+eIr+p+    +  r++lg++ tae+Aa+a++ a+++++g
  Niben101Scf01374g05001.1  66 VYRGVRMRS-WGKWVSEIREPR----KeSRIWLGTYPTAEMAARAHDVAALSIKG 115
                               59****998.**********84....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3466129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3166124IPR001471AP2/ERF domain
PfamPF008472.3E-1266115IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2166124IPR016177DNA-binding domain
PROSITE profilePS5103223.51266123IPR001471AP2/ERF domain
PRINTSPR003671.9E-106778IPR001471AP2/ERF domain
CDDcd000184.44E-3067125No hitNo description
PRINTSPR003671.9E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAEVELPCPE TESSSTNSSS SSSSLSSESM HNSVFDSSKE LPEEKKRPTK RKRETNNSQN  60
RAQNQVYRGV RMRSWGKWVS EIREPRKESR IWLGTYPTAE MAARAHDVAA LSIKGNSAIL  120
NFPNLIDSLP RPVSNLPRDV QAAAAKAAAM NFNLTSVSSS SSSSSSTTIT STCSEELGEI  180
IELPNLEENE ETKTELRWSD SVEGWLYSPW WASSDSDFCG YFLEQSAPGT GESLIPSSFE  240
ILKWGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19621241073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799693.11e-130PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_016493944.11e-130PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD37e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4BYT81e-129A0A1S4BYT8_TOBAC; ethylene-responsive transcription factor TINY-like
TrEMBLA0A1U7Y9A71e-129A0A1U7Y9A7_NICSY; ethylene-responsive transcription factor TINY-like
STRINGXP_009799693.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]