PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01392g03014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 335aa MW: 37624.2 Da PI: 9.0692

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01392g03014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Niben101Scf01392g03014.1 105 KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSN 165 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	102	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MKFQNMLFLV ANRYMEPPKR PSQVKWHFPC FRTRASCKVR CFHHLLCDSL PSFPPFAFSS 60 PLLSAPPYPF FNMDTSHWPQ GIGLVKAVEP SKPVPATERK PRPQKEQAIN CPRCNSTNTK 120 FCYYNNYSLS QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSNSSNNS SSSTSSYKKI 180 PDITIPTSSQ NPKIINEPHD LNLTFNPSTT SNFSNISEFM TLPLMNPNST TSFMSSIMPQ 240 LSDSNNIMYS SSSTRLPNLH DLKPTLNFSL DGFDNDNGYG SLQGETAGAK LFFPLDDLKN 300 VSTANDDHEF DEQNRGQAAE SHGFWNGMLG GGSSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238122.1	1e-169	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1J6KS52	1e-168	A0A1J6KS52_NICAT; Dof zinc finger protein dof4.6
STRING	XP_009801284.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	3e-39	Dof family protein