PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01418g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 248aa    MW: 27657.9 Da    PI: 8.7244
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01418g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.99.5e-182660135
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilel 35
                              kprlrWt +LH++Fv+av++LGG+ekAtPk++l+l
  Niben101Scf01418g00012.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEKATPKSVLRL 60
                              79******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-152360IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-122665IPR006447Myb domain, plants
SuperFamilySSF466897.7E-52660IPR009057Homeodomain-like
PfamPF143792.0E-9112137IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYNGSGVGRG GGFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE KATPKSVLRL  60
GQQAKRQNIA EQNKENSSGD SSGQFNLHSS GPSTSSLSMN YIQRDVPIAE AVQQKLQMRI  120
EAQGKYLQAI LSKAQKSIPV NMNSPSAVEA TRAQLTDFDL PLSNLMNYTN RQNRDDYIIG  180
KTTHDDNMKE ELQRSSYIVE EEQKSNMNLK LKEASINFDL NSRSSYDFVG ANAAVLEAKS  240
LSHGRLDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769429.11e-157PREDICTED: myb family transcription factor APL isoform X2
RefseqXP_016486019.11e-157PREDICTED: myb family transcription factor APL-like isoform X2
TrEMBLA0A1S4BAV01e-156A0A1S4BAV0_TOBAC; myb family transcription factor APL-like isoform X2
TrEMBLA0A1U7W4711e-156A0A1U7W471_NICSY; myb family transcription factor APL isoform X2
STRINGXP_009769428.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44162139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.16e-46G2-like family protein