PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01426g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 159aa    MW: 18018.9 Da    PI: 9.7848
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01426g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.42.8e-17238340
                   G2-like  3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40
                              +++WtpeLH++Fv+aveqL G+++AtP++ilelmkv+g
  Niben101Scf01426g00007.1  2 KVDWTPELHKKFVKAVEQL-GIDQATPSRILELMKVEG 38
                              789****************.****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-14238IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-13238IPR006447Myb domain, plants
PfamPF002491.6E-5335IPR001005SANT/Myb domain
SuperFamilySSF466896.99E-8338IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKVDWTPELH KKFVKAVEQL GIDQATPSRI LELMKVEGCN GGKFCQRKMR KDGFVLNLEI  60
QYRGAIIHIT LPWPSQHINR IMHLLLVNSI PPGYHKVAYP NGAHMWGSPY YPGWQLSQTW  120
HWKPHPGLYA GVWGCTVVPS SSGSCPPYPQ GTSTKDTRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595585.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595586.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595587.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595588.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_009595589.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_018624868.13e-45PREDICTED: two-component response regulator-like APRR2
RefseqXP_018624869.13e-45PREDICTED: two-component response regulator-like APRR2
TrEMBLA0A1S3X7R11e-43A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2
STRINGXP_009595585.11e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.53e-17ARR-B family protein