PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01428g04013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 226aa    MW: 25523.3 Da    PI: 5.8364
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01428g04013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.6e-191566255
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +g+++AeIrd  +++    r++lg+f taeeAa+a+++a+ +++g
  Niben101Scf01428g04013.1 15 KYRGVRKRP-WGKFAAEIRDtSRQG--GVRVWLGTFTTAEEAARAYDKAAYSIRG 66
                              8********.**********44334..4************************998 PP
2AP256.66.6e-18113163456
                       AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               kGVr ++ +g+++AeIrd  +++    r++lg+f taeeAa+a+++a+ +++g+
  Niben101Scf01428g04013.1 113 KGVRKRP-WGKFAAEIRDtSRQG--GVRIWLGTFTTAEEAARAYDKAAYSMRGN 163
                               8******.**********44334..4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.2611574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-291576IPR001471AP2/ERF domain
PfamPF008478.1E-131566IPR001471AP2/ERF domain
SMARTSM003801.2E-311580IPR001471AP2/ERF domain
CDDcd000181.57E-261575No hitNo description
SuperFamilySSF541712.62E-201575IPR016177DNA-binding domain
PRINTSPR003673.9E-111627IPR001471AP2/ERF domain
PRINTSPR003673.9E-114056IPR001471AP2/ERF domain
PROSITE profilePS5103221.694111170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-27113172IPR001471AP2/ERF domain
PfamPF008474.7E-12113162IPR001471AP2/ERF domain
SMARTSM003802.7E-28113176IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-19113171IPR016177DNA-binding domain
CDDcd000181.19E-24113171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDERGKINDN TEEVKYRGVR KRPWGKFAAE IRDTSRQGGV RVWLGTFTTA EEAARAYDKA  60
AYSIRGNLAI LNFPEEYNLP SSSSHFNTSS SMASSSVQER NEQVLELEYL DDKGVRKRPW  120
GKFAAEIRDT SRQGGVRIWL GTFTTAEEAA RAYDKAAYSM RGNLAILNFP EEYNLPSSSS  180
HFNTGSSSMA SSSVQVRNEQ VLELEYLDDK LLEELLDCDQ HANKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3412261129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800610.14e-65PREDICTED: ethylene-responsive transcription factor ERF096-like
RefseqXP_016432386.14e-65PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3WY139e-64A0A1S3WY13_TOBAC; ethylene-responsive transcription factor ERF096-like
TrEMBLA0A1U7YP439e-64A0A1U7YP43_NICSY; ethylene-responsive transcription factor ERF096-like
STRINGXP_009800610.12e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]