PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01433g08025.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 161aa    MW: 17947.3 Da    PI: 5.2848
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01433g08025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.2e-07431532
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClle 32
                               C+ +e+  ++lfC  ++  lC+ C ++
  Niben101Scf01433g08025.1  4 LCDVCESAAAILFCAADEAALCRACDEK 31
                              6************************986 PP
2zf-B_box16.41.9e-0549771438
                  zf-B_box 14 lqlfCedCqqllCedClleeHkg....Ht 38
                              + ++Ce +++ lC +C +  H g    H+
  Niben101Scf01433g08025.1 49 AFFYCEVDGSSLCLQCDMIVHVGgkrtHS 77
                              669***************99966566675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.1142IPR000315B-box-type zinc finger
CDDcd000215.49E-6330No hitNo description
CDDcd000210.001024778No hitNo description
SMARTSM003360.384781IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MWTLCDVCES AAAILFCAAD EAALCRACDE KGVQNELTIA NFLYVTREAF FYCEVDGSSL  60
CLQCDMIVHV GGKRTHSRYL LLRQKVEFPG DKPGPMEELA GKTLDPGENK REYSHSPKPM  120
VEDNQQNSRF SPVEVSDGSA DGHAKKDKMI DLNVKPNRYH G
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599859.12e-93PREDICTED: B-box zinc finger protein 19-like
RefseqXP_016486840.12e-93PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM58e-44BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S4BD336e-92A0A1S4BD33_TOBAC; B-box zinc finger protein 19-like
STRINGXP_009599859.19e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-46DBB family protein