PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01435g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 324aa MW: 37137.5 Da PI: 7.4996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01435g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	15	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratk 79 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++ + +++wyfFs++dkky+tg+r+nrat+ Niben101Scf01435g02002.1 15 VPPGFRFHPTEEELLHYYLRKKVACEKIDL-DVIRDVDLNKLEPWDIQEkcriG--GstPQNDWYFFSHKDKKYPTGTRTNRATA 96 69**************************.9***********9534332..222556******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+dk +++ + + +g++ktLvfykgrap+g+k+dW++heyrl Niben101Scf01435g02002.1 97 AGFWKATGRDKVIHT-NCKRIGMRKTLVFYKGRAPHGQKSDWIVHEYRL 144 *********99.8889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-56	10	175	IPR003441	NAC domain
PROSITE profile	PS51005	55.192	15	175	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	16	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MSKDMNLSVN GQSQVPPGFR FHPTEEELLH YYLRKKVACE KIDLDVIRDV DLNKLEPWDI 60 QEKCRIGGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIH TNCKRIGMRK 120 TLVFYKGRAP HGQKSDWIVH EYRLDDNMTN PQDAVNASEP SSPEEGWVVC RVFKKKNYHK 180 ALESPHQNSS AVSIMNSRTL IQKPNNDGVL DQILMYMGRS SCKQHDQENK HNINFVNNIN 240 NIHLDDHHMQ INSNSFINTN SSSSSRFLHL PGLENHHSPT TNMDDDVSFL QLIQQDCSFG 300 HENMLTETEP SSGSVMDFGR HPPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	12	177	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	12	177	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	12	177	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	12	177	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-48	12	177	17	170	NAC domain-containing protein 19
3swm_B	3e-48	12	177	17	170	NAC domain-containing protein 19
3swm_C	3e-48	12	177	17	170	NAC domain-containing protein 19
3swm_D	3e-48	12	177	17	170	NAC domain-containing protein 19
3swp_A	3e-48	12	177	17	170	NAC domain-containing protein 19
3swp_B	3e-48	12	177	17	170	NAC domain-containing protein 19
3swp_C	3e-48	12	177	17	170	NAC domain-containing protein 19
3swp_D	3e-48	12	177	17	170	NAC domain-containing protein 19
4dul_A	2e-48	12	177	14	167	NAC domain-containing protein 19
4dul_B	2e-48	12	177	14	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258933.1	0.0	PREDICTED: NAC domain-containing protein 43-like
Swissprot	Q84WP6	1e-112	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A314LF65	0.0	A0A314LF65_NICAT; Nac domain-containing protein 43
STRING	XP_009774438.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-103	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]