PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01448g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 188aa MW: 20702.1 Da PI: 7.786

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01448g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.2	2.5e-42	11	110	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq Niben101Scf01448g00003.1 11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQ 95 7*********8855***************************************************************** PP DUF260 85 qqleqlkaelallke 99 +q+ +l++el+++++ Niben101Scf01448g00003.1 96 RQVIRLQKELDATNA 110 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-41	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINPSG 120 GSINNQITVN QQRSNLNIYG RRMGPVDGTT TGFDQNYGFC TPNYSPNTWN NTTISGNHNP 180 GGDDDSSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-64	2	129	2	128	LOB family transfactor Ramosa2.1
5ly0_B	3e-64	2	129	2	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766717.1	1e-126	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_009766723.1	1e-126	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016507963.1	1e-126	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q8L8Q3	4e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4D3Q4	1e-124	A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBL	A0A1U7VF65	1e-124	A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
STRING	XP_009766717.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]