PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01462g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 233aa MW: 26427.2 Da PI: 9.9768

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01462g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.6	1.7e-17	14	80	30	91
FAR1 30 krtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +r fvC +eg+r e++k + +r+raetr+gCka+l+v+ ++ ++w+v+ +++eHnHel+p Niben101Scf01462g01002.1 14 DRSFVCAREGFRVEKEKPgrdggGARIKRPRAETRVGCKAMLVVNIQNMARWVVSGFVKEHNHELVP 80 689*********99999999999999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	14	80	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-13	184	232	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
LWKIELEPLG IRNDRSFVCA REGFRVEKEK PGRDGGGARI KRPRAETRVG CKAMLVVNIQ 60 NMARWVVSGF VKEHNHELVP PDKVHCLRSH RHVSGPAKSL IDTLQGAGIG PSGIMSALIM 120 EYGGIRSRTP GVDPQTLLDY LKQKHLENRS FFYSIQGDED HCMSNIFWAN PKARTNFSNY 180 GDTVTFDTTY RSNRYRLPFA PFTRVNHHGQ PVLFGCTFLI NESKASFSWL FST

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775261.1	1e-143	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	1e-100	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U7WDD4	1e-142	A0A1U7WDD4_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009775261.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]