PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01478g07007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18422.1 Da    PI: 9.0662
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01478g07007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-212471249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               i n    qvtfskRr g++KKA+ELS LC+aevavi+ s+ gk+y +
  Niben101Scf01478g07007.1 24 EIANRNSLQVTFSKRRVGVFKKASELSALCGAEVAVIVESPAGKVYSF 71
                              68899999**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.9131575IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-281574IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-241685IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-181737IPR002100Transcription factor, MADS-box
PfamPF003193.7E-232571IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-183752IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-185273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEKKNDNEEI KKKSKGRRKI RIEEIANRNS LQVTFSKRRV GVFKKASELS ALCGAEVAVI  60
VESPAGKVYS FGYPCVDSVI NRYETGGHVE EDGFSAALRL QIEEESKKKY LEAMGILDKE  120
KGLHWNSIVI LDVDTSLRFQ KFDVRRWLVA LDKKIEGEEE R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511813.14e-71PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4DEN61e-69A0A1S4DEN6_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009770753.15e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-22AGAMOUS-like 62