PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01479g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 213aa    MW: 24641.5 Da    PI: 9.288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01479g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.28.7e-29109053128
                       NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                                ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk+v+s+++++     +gl+k Lv+y+g+a kg+ktdW+mhe+rl
  Niben101Scf01479g01004.1  10 MGDKEWYFFCMRGRKYKNSARPNRVTRSGFWKATGIDKPVYSTTKSQnhdciIGLRKCLVYYRGSAGKGTKTDWMMHEFRL 90 
                               4789**************************************8444456777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.1981118IPR003441NAC domain
SuperFamilySSF1019411.96E-319117IPR003441NAC domain
PfamPF023654.4E-131490IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MIYYEGASTM GDKEWYFFCM RGRKYKNSAR PNRVTRSGFW KATGIDKPVY STTKSQNHDC  60
IIGLRKCLVY YRGSAGKGTK TDWMMHEFRL PPTWKTTSNQ LPSNHEAEVW TLCRIFKRTS  120
NYKRYTPEGK HPLVSLSFED ASPKACSLKS ENSGDHSIKI KQMSFQQESN NGDVNLMDER  180
NPHFYQQQPF TSSSSSFWNT SNGEEEDLFS DGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-28812466171NO APICAL MERISTEM PROTEIN
1ut4_B2e-28812466171NO APICAL MERISTEM PROTEIN
1ut7_A2e-28812466171NO APICAL MERISTEM PROTEIN
1ut7_B2e-28812466171NO APICAL MERISTEM PROTEIN
3swm_A3e-28812469174NAC domain-containing protein 19
3swm_B3e-28812469174NAC domain-containing protein 19
3swm_C3e-28812469174NAC domain-containing protein 19
3swm_D3e-28812469174NAC domain-containing protein 19
3swp_A3e-28812469174NAC domain-containing protein 19
3swp_B3e-28812469174NAC domain-containing protein 19
3swp_C3e-28812469174NAC domain-containing protein 19
3swp_D3e-28812469174NAC domain-containing protein 19
4dul_A2e-28812466171NAC domain-containing protein 19
4dul_B2e-28812466171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621672.11e-132PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-54NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3XIG21e-131A0A1S3XIG2_TOBAC; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009621672.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-56NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]