PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01481g03005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 356aa MW: 39830.2 Da PI: 7.5717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01481g03005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Niben101Scf01481g03005.1 154 YECKTCNRTFPSFQALGGHRASH 176 99**********99999998887 PP
2	zf-C2H2	14.2	0.00013	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Niben101Scf01481g03005.1 240 HTCSYCGAEFNSGQALGGHMRRH 262 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.68E-8	153	176	No hit	No description
Pfam	PF13912	3.3E-13	153	178	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.843	154	181	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	154	176	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.68E-8	235	262	No hit	No description
SMART	SM00355	0.0084	240	262	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.5E-12	240	264	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.221	240	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METPQEEVVG VSNDLSHIVK GKRTKRLRPQ SPIPFTISVH SSTGDNGGDG REIAIINNNN 60 NSDSNISQPL ATSAENFPYE DVPTEEEEET AKCLILLSQG GHPSSRQRFI ESPPKKLFDL 120 FNDDMGLYPS KYNSKRYVET INIGNGAKAG TYVYECKTCN RTFPSFQALG GHRASHKKPK 180 PLTIEPKKSF FYFSDQDEPF PTNYKDNNNI NKLSPLSPLS TQFSNFNMES PNNKSSPRIH 240 TCSYCGAEFN SGQALGGHMR RHRGGANTSL CLSPLSTQAI SFEETPNNLK KPRNIGLSLD 300 LNLPAPEDQS QSRNIQHPPK YPKDQEQTQK QQQQQQQQHE QTALVLSTSQ LIDCHY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METPQEEVVG VSNDLSHIVK GKRTKRLRPQ SPIPFTISVH SSTGDNGGDG REIAIINNNN  60
NSDSNISQPL ATSAENFPYE DVPTEEEEET AKCLILLSQG GHPSSRQRFI ESPPKKLFDL  120
FNDDMGLYPS KYNSKRYVET INIGNGAKAG TYVYECKTCN RTFPSFQALG GHRASHKKPK  180
PLTIEPKKSF FYFSDQDEPF PTNYKDNNNI NKLSPLSPLS TQFSNFNMES PNNKSSPRIH  240
TCSYCGAEFN SGQALGGHMR RHRGGANTSL CLSPLSTQAI SFEETPNNLK KPRNIGLSLD  300
LNLPAPEDQS QSRNIQHPPK YPKDQEQTQK QQQQQQQQHE QTALVLSTSQ LIDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225932.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A314KSU5	0.0	A0A314KSU5_NICAT; Zinc finger protein zat5
STRING	XP_009609087.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-53	C2H2 family protein